Sequence Utilities

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Sequence Utilities Calculator Short description 2 lines

Description

Sequence Utilities
Name (not necessary):  
Nucleotide sequence without name:
(case insensitive, disregarded all letters except: agctuswrymkhbdvn)
gap simbols are: "nn nn", "nn·nn", "nn.nn"

lowercase
uppercase
as in original seq.
T       U

preserve gaps?
no    yes
   

Output: nucleotides in one line;
display the initial sequence;
display the initial sequence in the opposite (3' --> 5') direction;
display complementary sequence in 5' --> 3' direction;
display complementary sequence in 3' --> 5' direction;.
display double stranded sequence.


This tool is useful for manipulating nucleic acid sequences (reverse, reverse/complement, and double stranded). It is possible to perform several manipulations simultaneously. Sequences can be read aloud using the "Reading Aloud" tool.

For the translation of nucleic acids use "Six-Frame Translation" tool. "Rare codon Search" tool to display any rare codons.

Standard symbols for polymorph nucleotides:
Sg,CHA,C,T
WA,TBC,g,T
RA,gDA,g,T
YC,TVA,C,g
MA,CNA,g,C,T
Kg,T  


Citations

  1. The Prevalence of Angiostrongylus cantonensis/mackerrasae Complex in Molluscs from the Sydney Region
    Chan, D., Barratt, J., Roberts, T., Lee, R., Shea, M., Marriott, D., Marriott, D., Harkness, J., Malik, R., Jones, M., Aghazadeh, M., Ellis, J., Stark, D.
  2. Integrated morphological and molecular identification of cat fleas (Ctenocephalides felis) and dog fleas (Ctenocephalides canis) vectoring Rickettsia felis in central Europe
    Lawrence, A.L., Hii, S. F., Jirsová, D., Panáková, L., Ionic?, A.M., Gilchrist, K., Gilchrist, K., Modrý, D., Milhalca, A.D., Webb, C.E., Traub, R.J., Šlapeta, J.
  3. Comparison of Polymerase chain reaction methods and plating for analysis of enriched cultures of Listeria monocytogenes when using the ISO11290-1 method
    Dalmasso, M., Bolocan, A.S., Hernandez, M., Kapetanakou, A.E., Kuchta, T., Manios, S.G., Melero, B., Minarovi?ová, J., Muhterem, M., Nicolau, A.I., Rovira, J., Skandamis, P.N., Stessi, B., Wagner, M., Jordan, K., Rodríguez-Lázaro, D.
  4. Persistence of DNA in carcasses, slime and avian feces may affect interpretation of environmental DNA data
    Merkes, C.M., McCalla, S.G., Jensen, N.R., Gaikowski, M.P., Amberg, J.J.
  5. Overexpression of Plastid Transketolase in Tobacco Results in a Thiamine Auxotrophic Phenotype
    Khozaei, M., Fisk, S., Lawson, T., Gibon, Y., Sulpice, R., Stitt, M., Raines, C.A.





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