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AccuSure™ DNA Polymerase FAQs

1.Which polymerase do I need for my specific application?
2.What are the storage conditions and stabilities of Bioline polymerases?
3.I am having problems optimizing my PCR, what would you recommend?
4.What do the terms yield, fidelity, processivity and specificity actually mean?
5.What is a proofreading polymerase?
6.What are the error rates of Bioline’s DNA Polymerases?
7.How is one unit of activity of a polymerase defined?
8.I require a very high fidelity polymerase for my application, which Bioline polymerase should I choose?
9.What are the optimal extension conditions for these polymerases?
10.How long a fragment will these polymerases amplify?
11.What is the difference between ACCUZYME and AccuSure DNA Polymerases?
12.Can I use the DNA amplified using ACCUZYME Red DNA Polymerase for further, post PCR applications?


1. Which polymerase do I need for my specific application?
At Bioline we pride ourselves in supplying high-quality polymerases to suit your requirements. To aid your selection of the most suited enzyme for your specific applications, please see our polymerase selection guide.

2. What are the storage conditions and stabilities of Bioline polymerases?
All our polymerases are guaranteed for a period of 12 months from the date of purchase. These should be stored at
-20°C during this time for optimal retention of activity.
Please Note: We do not recommend the storage of our polymerases at -80°C as ice crystals could form on the active site, which may affect or destroy the activity of the enzyme.

3. I am having problems optimizing my PCR, what would you recommend?
PCR can be a challenging technique, with various parameters to optimize to achieve the best results. If you are having problems, these could be easily resolved by addressing a few issues. Please see our PCR troubleshooting guide for suggestions and help with your specific problems.
As an alternative for quick and simple PCR optimization, we recommend using SureBand PCR Optimization kit.

4. What do the terms yield, fidelity, processivity and specificity actually mean?
These terms refer to parameters to be considered when performing PCR, and are important features in selecting the correct enzyme for your needs. Understanding what they mean is therefore crucial:
Yield: The amount of DNA produced in a PCR reaction
Fidelity: The accuracy of the enzyme at incorporating the correct dNTP to the elongating DNA strand.
Processivity: The length of time a polymerase is associated with the template, and therefore the size of fragment which can be amplified.
Specificity: A measure of the unwanted by-products generated in a reaction.

5. What is a proofreading polymerase?
In nature, the ability of a DNA polymerase to correct misincorporations of nucleotides in the DNA strand being elongated is often crucial to the survival of the host organism. This ability is termed “proofreading activity”, and occurs in the 3’ to 5’ direction. This activity also leads to the polymerase removing unpaired nucleotides overhanging at the 3’end (A-overhangs), creating blunt ends.

6. What are the error rates of Bioline’s DNA Polymerases?
Please see the following table for the appropriate error rates:

BIOLASE, BIOLASE Red, IMMOLASE,    Mango Taq, Taq DNA Polymerase
 1.1 x 10-4 base substitutions/bp (Tindall and Kunkel, 1988)
 2.4 x 10-5 frameshift mutations/bp (Tindall and Kunkel, 1988)
 2.1 x 10-4 errors/bp (Keohavang and Thilly, 1989)
 7.2 x 10-5 errors/bp (Ling et al., 1991)
 8.9 x 10-5 errors/bp (Cariello et al., 1991)
 2.0 x 10-5 errors/bp (Lundberg et al., 1991)
 1.1 x 10-4 errors/bp (Barnes, 1992)
ACCUZYME, ACCUZYME Red, AccuSure  1.6 x 10-6 errors/base (Lundberg et al., 1991).

7. How is one unit of activity of a polymerase defined?
One unit is defined as the amount of enzyme that incorporates 10nmoles of dNTPs into acid- insoluble form in 30 minutes at 72°C.

8. I require a very high fidelity polymerase for my application, which Bioline polymerase should I choose?
The ACCU Range is made of our highest fidelity polymerases, providing 47-fold higher fidelity than Taq:

ACCUZYME DNA Polymerase: A thermostable enzyme possessing 5’-3’ DNA polymerase and 3’-5’ proofreading exonuclease activities.

ACCUZYME Red DNA Polymerase: An enzyme with the same properties as ACCUZYME, containing an inert red dye for easy identification of reactions with polymerase added.

AccuSure DNA Polymerase: A hot-start version of ACCUZYME, with the same high-fidelity but also added specificity.

9. What are the optimal extension conditions for these polymerases?
The ACCU range of polymerases has an extremely fast extension rate compared to other proofreading enzymes, which are naturally slower than non-proofreading polymerases due to their ability to go back and correct nucleotide mis-incorporations. These polymerases will extend at a rate of as little as 30s/Kb, depending on the template amplified.
Extension should be carried out at 68°C for optimal results.

10. How long a fragment will these polymerases amplify?
All three polymerases in the ACCU range will process up to 5Kb fragments.

11. What is the difference between ACCUZYME and AccuSure DNA Polymerases?
AccuSure is simply a hot-start version of ACCUZYME, retaining all the same properties including extremely high fidelity.

AccuSure requires a 7-10 minute heat activation step at 95°C before starting the PCR reaction. This inactivation of the enzyme is achieved chemically, thus ensuring no enzyme activity at room temperature. This provides extremely high specificity in the PCR reaction.

12. Can I use the DNA amplified using ACCUZYME Red DNA Polymerase for further, post PCR applications?
As with all our colored polymerases, the dye contained in ACCUZYME Red is inert and will not interfere in further applications.

If you are concerned about these dyes interfering in your specific applications, we would recommend the cleanup of your samples using SureClean.

Please Note: ACCUZYME Red is provided at the same concentration as ACCUZYME, 2.5u/µl. .
   
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