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Highly efficient purification of total RNA from very small samples using an innovative silica-membrane column designed to elute in very small volumes, resulting in high RNA concentrations.

Product Highlights

  • Fast – simple extraction of high purity total RNA from twelve samples, ideal for use in all applications, in as little as 40 minutes
  • High-performance – excellent recovery of high quality RNA from single cells, laser-captured or flow-sorted cells, cryosections and small tissue samples, including biopsies
  • Safe - no hazardous phenol/chloroform extraction, CsCl centrifugation, LiCl or alcohol precipitation
  • Concentrated - small elution volumes ensure reaction volumes can be kept low in downstream applications, giving increased reaction efficiency
  • Convenient – includes all necessary components, including filters (shredders) and DNase I

Product Description

The ISOLATE II RNA Micro Kit provides a simple, efficient column-based method for the isolation of total RNA from a wide variety of starting materials, without the need for hazardous reagents such as phenol.

By combining the stringency of guanidinium-thiocyanate lysis with the speed and ease-of-use of silica-membrane purification, the ISOLATE II RNA Micro Kit provides a fast method for the purification of high-quality total RNA from single cells, pellets of cultured cells, cryosections, laser-captured or flow sorted cells and small amounts of tissues, for example biopsy materials.

For applications that are sensitive to very small amounts of DNA, residual amounts of DNA remaining can be removed using a convenient on-column DNase treatment with the RNase-free DNase I that is supplied with the kit. 

The ISOLATE II RNA Micro Kit has been designed to deliver optimal performance in RT-qPCR in conjunction with either the SensiFAST cDNA Synthesis Kit and SensiFAST Real-Time PCR Kits, or the SensiFAST One-Step Real-Time RT-PCR Kits. Additionally, the ISOLATE II RNA Micro Kit can be used to purify samples prior to PCR and RT-PCR amplification using the Tetro cDNA Synthesis Kit and any enzyme from the Meridian PCR portfolio, including MyTaq DNA Polymerase.


  • RT-qPCR
  • End-point RT-PCR
  • Northern, dot and slot blotting
  • Array analysis
  • RNA protection assays
  • RNA-Seq

ISOLATE II RNA Micro Kit Customer Review

Nucleic Acid Isolation Guide

Download the ISOLATE II Guide with detailed product descriptions and performance data to help you choose the best product for your research

My aim is to isolate as much RNA as possible from a small amount of primary cells, which are then used for further qPCR experiments. With the help of Meridian products (ISOLATE II RNA Micro Kit and SensiFAST cDNA Synthesis Kit) it is possible to achieve the best results with the smallest amount of sample.

Ms. Barth, Medical Faculty of the University of Saarland, Germany




10 Preps

50 Preps




ISOLATE II RNA Micro Columns & Collection Tubes



Collection Tubes (2 mL)



Collection Tubes (1.5 mL)



Lysis Buffer RLY

6 mL

25 mL

Wash Buffer RW1

2 x 1 mL

15 mL

Wash Buffer RW2

6 mL

12 mL

Membrane Desalting Buffer MEM

10 mL

10 mL

Reaction Buffer for DNase I RDN

7 mL

7 mL

DNase, RNase-free (lyophilized)

1 Vial

1 Vial

Carrier RNA

300 µg

300 µg

Reducing Agent TCEP

14 mg

3 x 14 mg 

RNase-free Water

13 mL

13 mL

Bench Protocol Sheet



Storage & Stability

All kit components should be stored dry and at room temperature. When stored under the recommended conditions and handled correctly, full activity of this kit is retained until the expiry date indicated on the outer box label.

Shipping conditions

Shipped at ambient temperature.



"We used the Isolate II RNA Micro Kit, SensiFAST cDNA synthesis kit and ...

""My aim is to isolate as much RNA as possible from a small amount of ...


The columns supplied with the ISOLATE II kits may appear similar, but each type has been optimized to work within the buffer system supplied with the corresponding kit. The swapping of columns (or buffers) between kits may lead to no recovery of nucleic acid whatsoever, or at the very least severely impaired purification.

Interruption of the DNA/RNA extraction process is possible after the sample lysis only. It is possible to homogenize and lyse the samples and to store them in the freezer until use for RNA extraction. RNA clean up with a column cannot be interrupted and we recommend to avoid delays during the column purification process. If a delay is unavoidable the columns should be stored on ice.

The ISOLATE II RNA Micro Kit contains poly-A RNA for use as carrier RNA. We recommend to add 20 ng of carrier RNA to the sample lysate. This may improve the recovery of total RNA, but is overall dependent on sample type and RNA amount. The small amounts of poly-A RNA do not interfere with subsequent real-time PCR, even when oligo-dT is used as a primer for reverse transcription. If a poly-A RNA isolation is to be performed post isolation, carrier RNA should not be added. Other types of carrier RNA like ribosomal RNA or glycogen may be used instead, but are not supplied with this kit.

An increase of A230 values may be caused by different substances, like carbohydrates, peptides and phenol. A bad A230/A260 ratio in RNA samples is mostly due to a contamination with guanidinium thiocyanate which is present in several reagents used for RNA extraction, for instance in the lysis buffer. In contrast to a bad A280/A260 ratio it does not automatically reflect a bad RNA quality. Currently there is no consensus about a lower limit of this ratio and mostly a carry-over of guanidinium thiocyanate does not affect the reliability of downstream applications. Nevertheless, an extra washing step with RW2 would be helpful to avoid this problem. And it would be helpful to pipet the flow-through out of the collection tube, instead of pouring it off. 

It is possible to use the ISOLATE II Plant DNA and RNA kits. The optimized lysis of these kits may be also useful for processing difficult to lyse bacteria and fungi in soil samples

For the optimal recovery of large RNA/DNA fragments it is necessary to optimize the elution step. To increase the recovery rate it would be helpful to use a larger volume for elution, incubate the column with the elution buffer prior to centrifugation and use repeated elution steps. To avoid excessive dilution it may be helpful to reapply the eluted fraction again.

Several possibilities exist. If you are using our column based extraction kit like the ISOLATE II RNA Mini kit it would be necessary to decrease the sample amount of such samples or to increase the amount of the lysis buffer RLY to prevent clogging of the columns. Another possibility would be a pre-extraction with TRIsure (BIO-38032) and to clean up the RNA containing aqueous phase with the column based ISOLATE II RNA kits. You should follow the TRIsure protocol up to the phase separation step. Then mix the aqueous phase with a volume of ethanol and load it onto the column. From there you should proceed with the regular ISOLATE II RNA Mini kit protocol.

These samples are treated as usual, just remove the RNAlater solution.

Agarose gel analysis of RNA samples can be both valuable and misleading. The pattern of bands on the gel can not only be indicative of the quality of the sample, but equally it can also only indicate that the gel tank, buffer or agarose is contaminated with RNase. A safer measure is to use a Bioanalyzer and look at the RIN value (RNA Integrity Number), which should be as close to 10 as possible, indicating that the RNA is not degraded. A spectrophotometer (ideally a microfluidic one) can also be used to determine the ratio of A260 to A280 for purity determination.

All these methods give an idea of the quality of total RNA which tends to be dominated with rRNA and tRNA. It is not uncommon for an agarose gel to show an abundance of 18S and 23S rRNA but on analysis for there to be little of the transcript of interest. Ideally RNA quality control should include an assessment of the presence of common transcripts (from reference genes, such as GAPDH) using RT-PCR or RT-qPCR.

If the yield of RNA is low, it is best to first check that all the solutions used and the equipment employed is largely free of RNase. Solutions should be prepared with the highest quality reagents available, preferably ones that have a certificate of analysis to show that they are free of DNase and RNase. If there is confidence that RNase contamination is at a minimum, then it may be worth ensuring that the sample is properly homogenised before lysis and to check a sample of the lysed material under a light microscope to ensure that all the cells are disrupted.

RNA samples that have been contaminated with RNase (either during processing or those that have been sent from another lab) can be purified using the ISOLATE II RNA Micro Kit.